NCGR Publications - 2013

Comparative genomic analysis of two Burkholderia glumae strains from different geographic origins reveals a high degree of plasticity in genome structure associated with genomic islands.
Francis F, Kim J, Ramaraj T, Farmer A, Rush MC, Ham JH.
Mol Genet Genomics. 2013 Apr;288(3-4):195-203.

Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies.
Sugawara M, Epstein B, Badgley B, Unno T, Xu L, Reese J, Gyaneshwar P, Denny R, Mudge J, Bharti AK, Farmer AD, May GD, Woodward JE, Medigue C, Vallenet D, Lajus A, Rouy Z, Martinez-Vaz B, Tiffin P, Young ND, Sadowsky MJ.
Genome Biol. 2013 Feb 20;14(2):R17.
 

Phylogenetic signal variation in the genomes of medicago (fabaceae).
Yoder JB, Briskine R, Mudge J, Farmer A, Paape T, Steele K, Weiblen GD, Bharti AK, Zhou P, May GD, Young ND, Tiffin P.
Syst Biol. 2013 May 1;62(3):424-38. doi: 10.1093/sysbio/syt009. Epub 2013 Feb 15.
 

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement.
Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar'an B, Millan T, Zhang X, Ramsay LD, Iwata A, Wang Y, Nelson W, Farmer AD, Gaur PM, Soderlund C, Penmetsa RV, Xu C, Bharti AK, He W, Winter P, Zhao S, Hane JK, Carrasquilla-Garcia N, Condie JA, Upadhyaya HD, Luo MC, Thudi M, Gowda CL, Singh NP, Lichtenzveig J, Gali KK, Rubio J, Nadarajan N, Dolezel J, Bansal KC, Xu X, Edwards D, Zhang G, Kahl G, Gil J, Singh KB, Datta SK, Jackson SA, Wang J, Cook DR.
Nat Biotechnol. 2013 Mar;31(3):240-6. doi: 10.1038/nbt.2491. Epub 2013 Jan 27.
 

IBI series winner. Keeping an eye on biology.
Singer SR, Schwarz JA, Manduca CA, Fox SP, Iverson ER, Taylor BJ, Cannon SB, May GD, Maki SL, Farmer AD, Doyle JJ.
Science. 2013 Jan 25;339(6118):408-9. doi: 10.1126/science.1229848.


Transcriptome profiling of cytokinin and auxin regulation in tomato root
Sarika Gupta, Xiuling Shi, Ingrid E. Lindquist, Nicholas Devitt, Joann Mudge, and Aaron M. Rashotte
J. Exp. Bot. 2013 64: 695-704.

Transcriptome Analysis of Cytokinin Response in Tomato Leaves.
Shi X, Gupta S, Lindquist IE, Cameron CT, Mudge J, et al.
PLoS ONE 8(1): e55090. doi:10.1371/journal.pone.0055090


Genome sequence of non-O1 Vibrio cholerae PS15.
Kumar S, Lindquist IE, Sundararajan A, Rajanna C, Floyd JT, Smith KP, Andersen JL, He G, Ayers RM, Johnson JA, Werdann JJ, Sandoval AA, Mojica NM, Schilkey FD, Mudge J, Varela MF.
Genome Announc. 1(1):e00227-12. doi:10.1128/genomeA.00227-12.


Candidate Genes and Genetic Architecture of Symbiotic and Agronomic Traits Revealed by Whole-Genome, Sequence-Based Association Genetics in Medicago truncatula

J. Stanton-Geddes, T. Paape, B. Epstein, R. Briskine, J. Yoder, J. Mudge, A. K. Bharti, A. D. Farmer, P. Zhou and R. Denny
PloS one. 2013; 8(5):e65688.

Genome Sequence of a Novel, Newly Identified Isolate of Guinea Pig Cytomegalovirus, the CIDMTR Strain.
Schleiss MR1, Hernandez-Alvarado N, Ramaraj T, Crow JA.
Genome Announc. 2013 Dec 26;1(6). pii: e01052-13. doi: 10.1128/genomeA.01052-13.

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