NCGR Publications - 2015

Development and Validation of 697 Novel Polymorphic Genomic and EST-SSR Markers in the American Cranberry (Vaccinium macrocarpon Ait.).
Brandon Schlautman, Diego Fajardo, Tierney Bougie, Eric Wiesman, James Polashock,
Nicholi Vorsa, Shawn Steffan and Juan Zalapa.
Molecules. 2015 Jan 27;20(2):2001-13. doi: 10.3390/molecules20022001. PMID: 25633331

Repertoire of virus-derived small RNAs produced by mosquito and mammalian cells in response to dengue virus infection.
Schirtzinger EE, Andrade CC, Devitt N, Ramaraj T, Jacobi JL, Schilkey F, Hanley KA.
Virology. 2015 Feb;476:54-60. doi: 10.1016/j.virol.2014.11.019. Epub 2014 Dec 17. PMID: 25528416

High-Quality Draft Genome Sequence of Actinobacterium Kibdelosporangium sp. MJ126-NF4, Producer of Type II Polyketide Azicemicins, Using Illumina and PacBio Technologies.
Ogasawara Y, Torrez-Martinez N, Aragon AD, Yackley BJ, Weber JA, Sundararajan A, Ramaraj T, Edwards JS, Melançon CE 3rd.
Genome Announc. 2015 Apr 2;3(2). pii: e00114-15. doi: 10.1128/genomeA.00114-15. PMID: 25838474

Next-generation transcriptome sequencing, SNP discovery and validation in four market classes of peanut, Arachis hypogaea L.
Chopra R, Burow G, Farmer A, Mudge J, Simpson CE, Wilkins TA, Baring MR, Puppala N, Chamberlin KD, Burow MD.
Mol Genet Genomics. 2015 Jun;290(3):1169-80. doi: 10.1007/s00438-014-0976-4. Epub 2015 Feb 7. PMID: 25663138

Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition.
Rudd JJ, Kanyuka K, Hassani-Pak K, Derbyshire M, Andongabo A, Devonshire J, Lysenko A, Saqi M, Desai NM, Powers SJ, Hooper J, Ambroso L, Bharti A, Farmer A, Hammond-Kosack KE, Dietrich RA, Courbot M.
Plant Physiol. 2015 Mar;167(3):1158-85. doi: 10.1104/pp.114.255927. Epub 2015 Jan 16. PMID: 25596183

Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection.
Duitama J, Silva A, Sanabria Y, Cruz DF, Quintero C, Ballen C, Lorieux M, Scheffler B, Farmer A, Torres E, Oard J, Tohme J.
PLoS One. 2015 Apr 29;10(4):e0124617. doi: 10.1371/journal.pone.0124617. eCollection 2015. PMID: 25923345

Making a chocolate chip: development and evaluation of a 6K SNP array for Theobroma cacao.
Livingstone D, Royaert S, Stack C, Mockaitis K, May G, Farmer A, Saski C, Schnell R, Kuhn D, Motamayor JC.
DNA Res. 2015 Aug;22(4):279-91. doi: 10.1093/dnares/dsv009. Epub 2015 Jun 11. PMID: 26070980

The plant-specific protein FEHLSTART controls male meiotic entry, initializing meiotic synchronization in Arabidopsis.
Li J, Dukowic-Schulze S, Lindquist IE, Farmer AD, Kelly B, Li T, Smith AG, Retzel EF, Mudge J, Chen C.
Plant J. 2015 Sep 18. doi: 10.1111/tpj.13026. PMID: 26382719

Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family.
Dash S, Campbell JD, Cannon EK, Cleary AM, Huang W, Kalberer SR, Karingula V, Rice AG, Singh J, Umale PE, Weeks NT, Wilkey AP, Farmer AD, Cannon SB.
Nucleic Acids Res. 2015 Nov 5. pii: gkv1159. PMID: 26546515

RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIM® genes for hereditary disorders of hearing and balance.
Daniel Ramírez-Gordillo, TuShun R. Powers, Jennifer C. van Velkinburgh, Casilda Trujillo-Provencio, Faye Schilkey, and Elba E. Serrano.
Biochemical and Biophysical Research Communications. BMC Research Notes 2015, 8:691 doi:10.1186/s13104-015-1485-1   PMID: 26582541

Composition, Diversity and Abundance of Gut Microbiome in Prediabetes and Type 2 Diabetes.
Stacey M Lambeth, Trechelle Carson, Janae Lowe, Thiruvarangan Ramaraj, Jonathan W. Leff, Li Luo, Callum J Bell, Vallabh O Shah.
J Diabetes Obes 2(3): 1-7. doi:10.15436/2376-0949.15.031.   PMID: 26756039


 

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